Publications C. Carlberg

All publications, years 1993-2017

1993  1994  1995  1996  1997  1998  1999  2000  2001  2002  2003  2004  2005  2006  2007  2008  2009 2010 2011  2012  2013  2014  2015  2016  2017  2018

Selected recent publications

  1. Saramäki A, Banwell CM, Campbell MJ & Carlberg C Regulation of the human p21(waf1/cip1) gene promoter via multiple binding sites for p53 and the vitamin D3 receptor. (2006) Nucl Acids Res 34, 543-554.
  2. Molnár F, Peräkylä M & Carlberg C Vitamin D receptor agonists specifically modulate the volume of the ligand-binding pocket. (2006) J Biol Chem 281, 10516-10526.
  3. Turunen MM, Dunlop TW, Carlberg C & Väisänen S Selective use of multiple vitamin D response elements underlies the 1α,25-dihydroxyvitamin D3-mediated negative regulation of the human CYP27B1 gene. (2007) Nucl Acids Res 35, 2734-2747.
  4. Heinäniemi M, Uski JO, Degenhardt T & Carlberg C Meta-analysis of primary target genes of peroxisome proliferator-activated receptors. (2007) Genome Biol 8, R147.
  5. Malinen M, Saramäki A, Ropponen A, Degenhardt T, Väisänen S & Carlberg C Distinct HDACs regulate the transcriptional response of human cyclin-dependent kinase inhibitor genes to trichostatin A and 1α,25-dihydroxyvitamin D3. (2008) Nucl Acids Res 36, 121-132.
  6. Saramäki A, Diermeier S, Kellner R, Latinen H, Väisänen S & Carlberg C Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1α,25-dihydroxyvitamin D3 (2009) J Biol Chem 284, 8073-8082.
  7. Malinen M, Ryynänen J, Heinäniemi M, Väisänen S & Carlberg C Cyclical regulation of the insulin-like growth factor binding protein 3 in response to 1α,25-dihydroxyvitamin D3. (2011) Nucl Acids Res 39, 502-512.
  8. Thorne JL, Maguire O, Doig CL, Battaglia S, Fehr L, Sucheston LE, Heinäniemi M, O'Neill LP, McCabe CJ, Turner, BM, Carlberg C & Campbell MJ Epigenetic control of a VDR-governed feed-forward loop that regulates p21(waf1/cip1) expression and function in non-malignant prostate cells. (2011) Nucl Acids Res 39, 2045-2056.
  9. Heikkinen S, Väisänen S, Pehkonen P, Seuter S, Benes V & Carlberg C Nuclear hormone 1α,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy. (2011) Nucl Acids Res 39, 9181-9193.
  10. John E, Wienecke-Baldacchino A, Liivrand M, Heinäniemi M, Carlberg C & Sinkkonen L Dataset integration identifies transcriptional regulation of microRNA genes by PPARγ in differentiating mouse 3T3-L1 adipocytes. (2012) Nucl Acids Res 40, 4446-4460.
  11. Pehkonen P, Welter-Stahl L, Diwo J, Ryynänen J, Wienecke-Baldacchino A, Heikkinen S, Treuter E, Steffensen KR & Carlberg C Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages. (2012) BMC Genomics 13, 50.
  12. Seuter S, Heikkinen S & Carlberg C Chromatin acetylation at transcription start sites and vitamin D receptor binding regions relates to effects of 1α,25-dihydroxyvitamin D3 and deacetylase inhibitors on gene expression. (2013) Nucl Acids Res 41, 110-124.
  13. Carlberg C, Seuter S, de Mello VDF, Schwab U, Voutilainen S, Pulkki K, Nurmi T, Virtanen J, Tuomainen TP & Uusitupa M Primary vitamin D target genes allow a categorization of possible benefits of vitamin D3 supplementation. (2013) PLoS ONE 8, e71042.
  14. Tuoresmäki P, Väisänen S, Neme A, Heikkinen S & Carlberg C Patterns of genome-wide VDR locations. (2014) PLoS ONE 9, e96105.
  15. Rybakova K, Tomaszewska A, van Mourik S, Joke B, Westerhoff, H, Carlberg C, Bruggeman F Tracing the molecular basis of transcriptional dynamics in noisy data by using an experiment-based mathematical model. (2015) Nucl Acids Res 43, 153-161.
  16. Vukić A, Neme A, Seuter S, Saksa N, de Mello VDF, Nurmi T, Uusitupa M, Tuomainen T-P, Virtanen JK, Carlberg C Relevance of vitamin D receptor target genes for monitoring the vitamin D responsiveness of primary human cells. (2015) PLoS ONE 10, e0124339.
  17. Seuter S, Neme A, Carlberg C Epigenome-wide effects of vitamin D and their impact on the transcriptome of human monocytes involve CTCF. (2016) Nucl Acids Res 44, 4090-104.